Links
From Jie Wu Home Page
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*[https://trac.nbic.nl/passion/ PASSion] | *[https://trac.nbic.nl/passion/ PASSion] | ||
*[http://research-pub.gene.com/gmap/ GSNAP] | *[http://research-pub.gene.com/gmap/ GSNAP] | ||
| + | *[https://github.com/alexdobin/STAR STAR] | ||
==Processing== | ==Processing== | ||
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==Quantification== | ==Quantification== | ||
| + | *[http://deweylab.biostat.wisc.edu/rsem/ RSEM] | ||
*[http://cufflinks.cbcb.umd.edu/ Cufflinks] | *[http://cufflinks.cbcb.umd.edu/ Cufflinks] | ||
*[http://www.broadinstitute.org/software/scripture/ Scripture] | *[http://www.broadinstitute.org/software/scripture/ Scripture] | ||
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==Differential expression== | ==Differential expression== | ||
| + | *[http://www.bioconductor.org/packages/release/bioc/html/edgeR.html edgeR] | ||
*[http://cufflinks.cbcb.umd.edu/manual.html Cuffdiff] | *[http://cufflinks.cbcb.umd.edu/manual.html Cuffdiff] | ||
*[http://www-huber.embl.de/users/anders/DESeq/ DESeq] | *[http://www-huber.embl.de/users/anders/DESeq/ DESeq] | ||
Latest revision as of 20:52, 15 June 2016
Contents |
[edit] Programs about mRNA-seq
I only listed programs I use regularly, for a more complete list, please check [[1]].