CV
From Jie Wu Home Page
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| − | + | This is my short CV, click here to see detailed CV. | |
| − | = | + | =Education= |
| − | + | {| | |
| + | |- valign="top" | ||
| + | | width="200" | 2008~Present | ||
| + | | '''Ph.D. Program (Major: Computational Biology)''' | ||
| + | Applied Mathematics and Statistics Department, Stony Brook University | ||
| + | |- valign="top" | ||
| + | | width="200" | 2004~2007 | ||
| + | | '''Master of Science (Major: Bioinformatics)''' | ||
| + | College of Life Sciences, Nankai University, China | ||
| + | |- valign="top" | ||
| + | | width="200" | 2000~2004 | ||
| + | | '''Bachelor of Science (Major: Biophysics)''' | ||
| + | Department of Biophysics, College of Physics, Nankai University, China | ||
| + | |} | ||
| + | |||
| + | ==Current Research== | ||
| + | |||
| + | {| | ||
| + | |- valign="top" | ||
| + | | width="200" | 2009.2~Present | ||
| + | | '''Graduate Student''' | ||
| + | '''Computational Biology and Bioinformatics Lab, Cold Spring Harbor Laboratory, Prof. Michael Q. Zhang''' | ||
| + | *Second generation sequencing data analysis | ||
| + | *Alternative splicing detection and quantification from mRNA-seq data and differential splicing analysis (SpliceTrap) | ||
| + | *Fast, accurate and sensitive splice mapping of mRNA-seq reads (OLego) | ||
| + | |} | ||
| + | |||
| + | ==Recent Publications== | ||
| + | |||
| + | ''(* Co-first author, ** major contribution)'' | ||
| + | *'''Jie Wu''', Olga Anczuków, Adrian R. Krainer, Michael Q. Zhang, Chaolin Zhang, OLego: Fast and sensitive mapping of spliced mRNA-Seq reads using small seeds. '''Nucleic Acid Research''', 2013, In press. ** | ||
| + | *Bin Zhang, Gayatri Arun, Yuntao S. Mao, Zsolt Lazar, Gene Hung, Gourab Bhattacharjee, Xiaokun Xiao, Carmen J. Booth, '''Jie Wu''', Chaolin Zhang, and David L.Spector, The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult. '''Cell Report''', 2012.2(1):111-123. | ||
| + | *'''Jie Wu'''*, Martin Akerman*, Shuying Sun, W. Richard McCombie, Adrian R. Krainer, Michael Q. Zhang, SpliceTrap: a method to quantify alternative splicing under single cellular conditions, '''Bioinformatics''', 2011.27(21): 3010-3016. ** | ||
| + | *Manli Shen, Eduardo Eyras, '''Jie Wu''', Amit Khanna, Serene Josiah, Mathieu Rederstorff, Michael Q. Zhang and Stefan Stamm, Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript expression. '''Nucleic Acid Research''', 2011.39(22): 9720–9730. | ||
| + | *Bing Xiong*, '''Jie Wu'''*, David L. Burk, Mengzhu Xue, Hualiang Jiang, Jingkang Shen, BSSF: a fingerprint based ultrafast binding site similarity search and function analysis server, '''BMC Bioinformatics''', 2010, 11:47 ** | ||
| + | *Bing Xiong, Ke Liu, '''Jie Wu''', David L. Burk, Hualiang Jiang, Jingkang Shen, DrugViz: a Cytoscape plugin for visualizing and analyzing small molecule drugs in biological networks, '''Bioinformatics''', 2008. 24(18):2117-2118. | ||
| + | *'''Jie Wu''', Ning Zhang, Zhuo Yang, Tao Zhang, Wavelet coherence and its application in analyzing auditory and motor task event-related potentials. '''ACTA BIOPYSICA SINICA''', 2007, 23(6): 482-487. ** | ||
Revision as of 02:41, 23 March 2013
This is my short CV, click here to see detailed CV.
Education
| 2008~Present | Ph.D. Program (Major: Computational Biology)
Applied Mathematics and Statistics Department, Stony Brook University |
| 2004~2007 | Master of Science (Major: Bioinformatics)
College of Life Sciences, Nankai University, China |
| 2000~2004 | Bachelor of Science (Major: Biophysics)
Department of Biophysics, College of Physics, Nankai University, China |
Current Research
| 2009.2~Present | Graduate Student
Computational Biology and Bioinformatics Lab, Cold Spring Harbor Laboratory, Prof. Michael Q. Zhang
|
Recent Publications
(* Co-first author, ** major contribution)
- Jie Wu, Olga Anczuków, Adrian R. Krainer, Michael Q. Zhang, Chaolin Zhang, OLego: Fast and sensitive mapping of spliced mRNA-Seq reads using small seeds. Nucleic Acid Research, 2013, In press. **
- Bin Zhang, Gayatri Arun, Yuntao S. Mao, Zsolt Lazar, Gene Hung, Gourab Bhattacharjee, Xiaokun Xiao, Carmen J. Booth, Jie Wu, Chaolin Zhang, and David L.Spector, The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult. Cell Report, 2012.2(1):111-123.
- Jie Wu*, Martin Akerman*, Shuying Sun, W. Richard McCombie, Adrian R. Krainer, Michael Q. Zhang, SpliceTrap: a method to quantify alternative splicing under single cellular conditions, Bioinformatics, 2011.27(21): 3010-3016. **
- Manli Shen, Eduardo Eyras, Jie Wu, Amit Khanna, Serene Josiah, Mathieu Rederstorff, Michael Q. Zhang and Stefan Stamm, Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript expression. Nucleic Acid Research, 2011.39(22): 9720–9730.
- Bing Xiong*, Jie Wu*, David L. Burk, Mengzhu Xue, Hualiang Jiang, Jingkang Shen, BSSF: a fingerprint based ultrafast binding site similarity search and function analysis server, BMC Bioinformatics, 2010, 11:47 **
- Bing Xiong, Ke Liu, Jie Wu, David L. Burk, Hualiang Jiang, Jingkang Shen, DrugViz: a Cytoscape plugin for visualizing and analyzing small molecule drugs in biological networks, Bioinformatics, 2008. 24(18):2117-2118.
- Jie Wu, Ning Zhang, Zhuo Yang, Tao Zhang, Wavelet coherence and its application in analyzing auditory and motor task event-related potentials. ACTA BIOPYSICA SINICA, 2007, 23(6): 482-487. **