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(Created page with " =Programs about mRNA-seq= I only list programs I use regularly, for a more complete list, please check SeqWiki. ==QC== *[http://w...")

Revision as of 22:04, 28 March 2013

Contents

Programs about mRNA-seq

I only list programs I use regularly, for a more complete list, please check [[1]].

QC

Mapping

Processing

  • [Samtools]
  • [bedtools]
  • [HTseq-count]

Quantification

  • [Cufflinks]
  • [Scripture]
  • [SpliceTrap]