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From Jie Wu Home Page
Revision as of 02:07, 8 August 2014 by
Wuj
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Contents
1
Programs about mRNA-seq
1.1
QC
1.2
Mapping
1.3
Processing
1.4
Quantification
1.5
Differential expression
2
Useful websites about splicing
3
Communities
Programs about mRNA-seq
I only listed programs I use regularly, for a more complete list, please check [
[1]
].
QC
FastQC
Mapping
Bowtie
BWA
OLego
TopHat
MapSplice
PASSion
GSNAP
Processing
SAMtools
BEDtools
HTseq-count
Quantification
RSEM
Cufflinks
Scripture
SpliceTrap
Differential expression
Cuffdiff
DESeq
DEXseq
Useful websites about splicing
RNAinfo, A website about RNA
ESEfinder
SFmap
Communities
SEQanswers
RNAseq blog
Biostar