Selected Publications

To see a full list, please click here to see my Google Scholar page.

(* Co-first author, ** major contribution)

  • Kristin A Knouse, Jie Wu and Angelika Amon. Assessment of megabase-scale somatic copy number variation using single cell sequencing, Genome Research, 2016. gr.198937.115. Link
  • Kristin A Knouse, Jie Wu, Charles A Whittaker and Angelika Amon. Single cell sequencing reveals low levels of aneuploidy across mammalian tissues. Proceedings of the National Academy of Sciences, 2014. 111(37):13409-13414. Link
  • Kerry R. Love, Kartik A. Shah, Charles A. Whittaker, Jie Wu, M. Catherine Bartlett, Duanduan Ma, Rachel L. Leeson, Margaret Priest, Jonathan Borowsky, Sarah K. Young & J. Christopher Love. Comparative genomics and transcriptomics of Pichia pastoris. BMC Genomics, 2016, link
  • Wangzhi Li, Jie Wu, Sang-Yong Kim, Ming Zhao, Stephen A Hearn, Michael Q Zhang, Marvin L Meistrich and Alea A Mills. Chd5 orchestrates chromatin remodelling during sperm development. Nature Communications, 2014. 5. Link
  • Jie Wu, Olga Anczuków, Adrian R. Krainer, Michael Q. Zhang, Chaolin Zhang. OLego: Fast and sensitive mapping of spliced mRNA-Seq reads using small seeds. Nucleic Acids Research, 2013, 41(10):5149-5163. Link
  • Bin Zhang, Gayatri Arun, Yuntao S. Mao, Zsolt Lazar, Gene Hung, Gourab Bhattacharjee, Xiaokun Xiao, Carmen J. Booth, Jie Wu, Chaolin Zhang, and David L. Spector. The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult. Cell Reports, 2012. 2(1):111-123. Link
  • Jie Wu*, Martin Akerman*, Shuying Sun, W. Richard McCombie, Adrian R. Krainer, Michael Q. Zhang. SpliceTrap: a method to quantify alternative splicing under single cellular conditions. Bioinformatics, 2011. 27(21):3010-3016. Link
  • Manli Shen, Eduardo Eyras, Jie Wu, Amit Khanna, Serene Josiah, Mathieu Rederstorff, Michael Q. Zhang and Stefan Stamm. Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript expression. Nucleic Acids Research, 2011. 39(22):9720–9730. Link
  • Bing Xiong*, Jie Wu*, David L. Burk, Mengzhu Xue, Hualiang Jiang, Jingkang Shen. BSSF: a fingerprint based ultrafast binding site similarity search and function analysis server. BMC Bioinformatics, 2010. 11:47. Link
  • Bing Xiong, Ke Liu, Jie Wu, David L. Burk, Hualiang Jiang, Jingkang Shen. DrugViz: a Cytoscape plugin for visualizing and analyzing small molecule drugs in biological networks. Bioinformatics, 2008. 24(18):2117-2118. Link
  • Jie Wu, Ning Zhang, Zhuo Yang, Tao Zhang. Wavelet coherence and its application in analyzing auditory and motor task event-related potentials. ACTA Biophysica Sinica, 2007. 23(6):482-487. **